ProtGenerics

This is the development version of ProtGenerics; for the stable release version, see ProtGenerics.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1

Generic infrastructure for Bioconductor mass spectrometry packages

Bioconductor version: Development (3.24)

S4 generic functions and classes needed by Bioconductor proteomics packages.

Author: Laurent Gatto <laurent.gatto at uclouvain.be>, Johannes Rainer <johannes.rainer at eurac.edu>

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("ProtGenerics")):

Laurent Gatto, Johannes Rainer. ProtGenerics: Generic infrastructure for Bioconductor mass spectrometry packages. doi:10.18129/B9.bioc.ProtGenerics, R package version 1.45.0, https://bioconductor.org/packages/ProtGenerics.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("ProtGenerics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Infrastructure, MassSpectrometry, Proteomics, Software
Version	1.45.0
In Bioconductor since	BioC 3.1 (R-3.2) (11.5 years)
License	Artistic-2.0
Depends	methods
Imports
System Requirements
URL	https://github.com/RforMassSpectrometry/ProtGenerics

Suggests	testthat
Linking To
Enhances
Depends On Me	Cardinal, Chromatograms, MetaboAnnotatoR, MsExperiment, SpectraQL, topdownr
Imports Me	CompoundDb, ensembldb, matter, MetaboAnnotation, MsBackendMassbank, MsBackendMassIVE, MsBackendMetaboLights, MsBackendMetabolomicsWorkbench, MsBackendMgf, MsBackendMsp, MsBackendRawFileReader, MsBackendSql, MsFeatures, MSnbase, MSnID, MsQuality, MsStash, mzID, mzR, PSMatch, QFeatures, quantMSImageR, Spectra, SpectriPy, xcms
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ProtGenerics_1.45.0.tar.gz
Windows Binary (x86_64)	ProtGenerics_1.45.0.zip
macOS Binary (big-sur-x86_64)	ProtGenerics_1.45.0.tgz
macOS Binary (sonoma-arm64)	ProtGenerics_1.45.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ProtGenerics
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ProtGenerics
Package Short Url	https://bioconductor.org/packages/ProtGenerics/
Package Downloads Report	Download Stats