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PTMods

This is the development version of PTMods; for the stable release version, see PTMods.

All Bioconductor versions of PTMods

3.24 (devel), 3.23 (release)

Managing Post-Translational Modifications in R

Bioconductor version: 3.24 · Package version: 1.1.0

An interface to the community supported database for amino acid/protein modifications using mass spectrometry.

Author: Laurent Gatto [aut] ORCID iD ORCID: 0000-0002-1520-2268 , Sebastian Gibb [aut] ORCID iD ORCID: 0000-0001-7406-4443 , Guillaume Deflandre [cre] ORCID iD ORCID: 0009-0008-1257-2416

Maintainer: Guillaume Deflandre <guillaume.deflandre at uclouvain.be>

DOI: 10.18129/B9.bioc.PTMods

Citation

From within R, enter citation("PTMods"):

Laurent Gatto, Sebastian Gibb. PTMods: Managing Post-Translational Modifications in R. doi:10.18129/B9.bioc.PTMods, R package version 1.1.0, https://bioconductor.org/packages/PTMods.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("PTMods")

For older versions of R, please refer to the appropriate Bioconductor release.

Details

Version1.1.0
LicenseGPL-3
URLhttps://github.com/RforMassSpectrometry/PTMods
Bug Reportshttps://github.com/RforMassSpectrometry/PTMods/issues
Last updated2026-04-28
In Bioconductor sinceBioC 3.23 (R-4.6) (less than a year)
Downloads rank373 of 2,456
Source branchdevel
Build report Bioconductor build system, r-universe
biocViewsMassSpectrometry, Proteomics, Software
Package Short Url https://bioconductor.org/packages/PTMods/

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PTMods")
The PTMods package: a package to handle post-translational modifications HTML R Script
Reference ManualPDF
NEWSText

Download

Follow the installation instructions to use this package in your R session.

Source packagePTMods_1.1.0.tar.gz
Windows binary (x86_64)PTMods_1.1.0.zip
macOS binary (arm64)PTMods_1.1.0.tgz
macOS binary (x86_64)PTMods_1.1.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/PTMods
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/PTMods
Package Downloads ReportDownload Stats
Dependencies

Depends: R (>= 4.5.0), methods

Suggests: xml2, testthat, knitr, BiocStyle, Biostrings

Enhances: PSMatch

Reverse dependencies

Depends On Me (1): PSMatch

Imports Me (1): MSnbase