PROPER

This is the development version of PROPER; for the stable release version, see PROPER.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1

PROspective Power Evaluation for RNAseq

Bioconductor version: Development (3.24)

This package provide simulation based methods for evaluating the statistical power in differential expression analysis from RNA-seq data.

Author: Hao Wu

Maintainer: Hao Wu <hao.wu at emory.edu>

Citation (from within R, enter citation("PROPER")):

Hao Wu. PROPER: PROspective Power Evaluation for RNAseq. doi:10.18129/B9.bioc.PROPER, R package version 1.45.0, https://bioconductor.org/packages/PROPER.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("PROPER")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PROPER")

Power and Sample size analysis for gene expression from RNA-seq	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software
Version	1.45.0
In Bioconductor since	BioC 3.1 (R-3.2) (11.5 years)
License	GPL
Depends	R (>= 3.3)
Imports	edgeR
System Requirements
URL

Suggests	BiocStyle, DESeq2, DSS, knitr
Linking To
Enhances
Depends On Me
Imports Me	cypress
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PROPER_1.45.0.tar.gz
Windows Binary (x86_64)	PROPER_1.45.0.zip
macOS Binary (big-sur-x86_64)	PROPER_1.45.0.tgz
macOS Binary (sonoma-arm64)	PROPER_1.45.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/PROPER
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PROPER
Package Short Url	https://bioconductor.org/packages/PROPER/
Package Downloads Report	Download Stats