OpenStats

This is the development version of OpenStats; for the stable release version, see OpenStats.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11

A Robust and Scalable Software Package for Reproducible Analysis of High-Throughput genotype-phenotype association

Bioconductor version: Development (3.24)

Package contains several methods for statistical analysis of genotype to phenotype association in high-throughput screening pipelines.

Author: Hamed Haseli Mashhadi

Maintainer: Marina Kan <marinak at ebi.ac.uk>

Citation (from within R, enter citation("OpenStats")):

Hamed Haseli Mashhadi. OpenStats: A Robust and Scalable Software Package for Reproducible Analysis of High-Throughput genotype-phenotype association. doi:10.18129/B9.bioc.OpenStats, R package version 1.25.1, https://bioconductor.org/packages/OpenStats.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("OpenStats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OpenStats")

OpenStats	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	BatchEffect, Bayesian, Software, StatisticalMethod
Version	1.25.1
In Bioconductor since	BioC 3.11 (R-4.0) (6.5 years)
License	GPL (>= 2)
Depends	nlme
Imports	MASS, jsonlite, Hmisc, methods, knitr, AICcmodavg, car, rlist, summarytools, graphics, stats, utils
System Requirements
URL	https://git.io/Jv5w0
Bug Reports	https://git.io/Jv5wg

Suggests	rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	OpenStats_1.25.1.tar.gz
Windows Binary (x86_64)	OpenStats_1.25.1.zip
macOS Binary (big-sur-x86_64)	OpenStats_1.25.1.tgz
macOS Binary (sonoma-arm64)	OpenStats_1.25.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/OpenStats
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/OpenStats
Package Short Url	https://bioconductor.org/packages/OpenStats/
Package Downloads Report	Download Stats