OTUbase
This is the development version of OTUbase; for the stable release version, see OTUbase.
Provides structure and functions for the analysis of OTU data
Bioconductor version: Development (3.20)
Provides a platform for Operational Taxonomic Unit based analysis
Author: Daniel Beck, Matt Settles, and James A. Foster
Maintainer: Daniel Beck <danlbek at gmail.com>
Citation (from within R, enter
citation("OTUbase")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("OTUbase")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OTUbase")
An introduction to OTUbase | R Script | |
Reference Manual |
Details
biocViews | DataImport, Sequencing, Software |
Version | 1.55.0 |
In Bioconductor since | BioC 2.7 (R-2.12) (14 years) |
License | Artistic-2.0 |
Depends | R (>= 2.9.0), methods, S4Vectors, IRanges, ShortRead(>= 1.23.15), Biobase, vegan |
Imports | Biostrings |
System Requirements | |
URL |
See More
Suggests | |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | OTUbase_1.55.0.tar.gz |
Windows Binary | OTUbase_1.55.0.zip |
macOS Binary (x86_64) | OTUbase_1.55.0.tgz |
macOS Binary (arm64) | OTUbase_1.55.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/OTUbase |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/OTUbase |
Bioc Package Browser | https://code.bioconductor.org/browse/OTUbase/ |
Package Short Url | https://bioconductor.org/packages/OTUbase/ |
Package Downloads Report | Download Stats |