NCIgraph

This is the development version of NCIgraph; for the stable release version, see NCIgraph.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8

Pathways from the NCI Pathways Database

Bioconductor version: Development (3.24)

Provides various methods to load the pathways from the NCI Pathways Database in R graph objects and to re-format them.

Author: Laurent Jacob

Maintainer: Laurent Jacob <laurent.jacob at gmail.com>

Citation (from within R, enter citation("NCIgraph")):

Laurent Jacob. NCIgraph: Pathways from the NCI Pathways Database. doi:10.18129/B9.bioc.NCIgraph, R package version 1.61.1, https://bioconductor.org/packages/NCIgraph.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("NCIgraph")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NCIgraph")

NCIgraph: networks from the NCI pathway integrated database as graphNEL objects.	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GraphAndNetwork, Pathways, Software
Version	1.61.1
In Bioconductor since	BioC 2.8 (R-2.13) (15.5 years)
License	GPL-3
Depends	R (>= 4.0.0)
Imports	graph, KEGGgraph, methods, RBGL, RCy3, R.oo
System Requirements
URL

Suggests	Rgraphviz
Linking To
Enhances	DEGraph
Depends On Me
Imports Me	DEGraph
Suggests Me	DEGraph
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	NCIgraph_1.61.1.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/NCIgraph
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/NCIgraph
Package Short Url	https://bioconductor.org/packages/NCIgraph/
Package Downloads Report	Download Stats