MsBackendMetaboLights
Retrieve Mass Spectrometry Data from MetaboLights
Bioconductor version: 3.24 · Package version: 1.7.7
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
MetaboLights is one of the main public repositories for storage of metabolomics experiments, which includes analysis results as well as raw data. The MsBackendMetaboLights package provides functionality to retrieve and represent mass spectrometry (MS) data from MetaboLights. Data files are downloaded and cached locally avoiding repetitive downloads. MS data from metabolomics experiments can thus be directly and seamlessly integrated into R-based analysis workflows with the Spectra and MsBackendMetaboLights package.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MsBackendMetaboLights")Details
| Maintainer | Johannes Rainer <Johannes.Rainer@eurac.edu> |
| Author | Johannes Rainer [aut, cre] (ORCID: <https://orcid.org/0000-0002-6977-7147>), Philippine Louail [aut] (ORCID: <https://orcid.org/0009-0007-5429-6846>), Gabriele Tomè [aut] (ORCID: <https://orcid.org/0000-0002-3976-6068>, fnd: MetaRbolomics4Galaxy project (CUP: D53C25001030003) co-funded by the Autonomous Province of Bolzano under the Joint Projects South Tyrol–Germany 2025 program.) |
| License | Artistic-2.0 |
| URL | https://github.com/RforMassSpectrometry/MsBackendMetaboLights |
| Bug Reports | https://github.com/RforMassSpectrometry/MsBackendMetaboLights/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software |
| Package Short Url | https://bioconductor.org/packages/MsBackendMetaboLights/ |
Citation
From within R, enter citation("MsBackendMetaboLights"):
Johannes Rainer, Philippine Louail, Gabriele Tomè. MsBackendMetaboLights: Retrieve Mass Spectrometry Data from MetaboLights. doi:10.18129/B9.bioc.MsBackendMetaboLights, R package version 1.7.7, https://bioconductor.org/packages/MsBackendMetaboLights.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | MsBackendMetaboLights_1.7.7.tar.gz |
| macOS binary (arm64) | MsBackendMetaboLights_1.7.3.tgz |
| macOS binary (x86_64) | MsBackendMetaboLights_1.7.7.tgz |
Dependencies
Depends: R (>= 4.2.0), Spectra (>= 1.15.12)
Imports: curl, ProtGenerics, BiocFileCache, S4Vectors, methods, progress, utils, MsCoreUtils (>= 1.23.8)
Reverse dependencies
Suggests Me (1): Chromatograms