MiRaGE

This is the development version of MiRaGE; for the stable release version, see MiRaGE.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11

MiRNA Ranking by Gene Expression

Bioconductor version: Development (3.24)

The package contains functions for inferece of target gene regulation by miRNA, based on only target gene expression profile.

Author: Y-h. Taguchi <tag at granular.com>

Maintainer: Y-h. Taguchi <tag at granular.com>

Citation (from within R, enter citation("MiRaGE")):

Y-h. Taguchi. MiRaGE: MiRNA Ranking by Gene Expression. doi:10.18129/B9.bioc.MiRaGE, R package version 1.55.0, https://bioconductor.org/packages/MiRaGE.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("MiRaGE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MiRaGE")

How to use MiRaGE Package	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GeneExpression, ImmunoOncology, Microarray, RNASeq, SAGE, Sequencing, Software
Version	1.55.0
In Bioconductor since	BioC 2.11 (R-2.15) (14 years)
License	GPL
Depends	R (>= 3.1.0), Biobase (>= 2.23.3)
Imports	BiocGenerics, S4Vectors, AnnotationDbi, BiocManager
System Requirements
URL

Suggests	seqinr (>= 3.0.7), biomaRt (>= 2.19.1), GenomicFeatures (>= 1.15.4), Biostrings (>= 2.31.3), BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm10, miRNATarget, humanStemCell, IRanges, GenomicRanges (>= 1.8.3), BSgenome, beadarrayExampleData
Linking To
Enhances
Depends On Me
Imports Me
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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MiRaGE_1.55.0.tar.gz
Windows Binary (x86_64)	MiRaGE_1.55.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	MiRaGE_1.55.0.tgz
macOS Binary (sonoma-arm64)	MiRaGE_1.55.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MiRaGE
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MiRaGE
Package Short Url	https://bioconductor.org/packages/MiRaGE/
Package Downloads Report	Download Stats