MethTargetedNGS

This is the development version of MethTargetedNGS; for the stable release version, see MethTargetedNGS.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1

Perform Methylation Analysis on Next Generation Sequencing Data

Bioconductor version: Development (3.24)

Perform step by step methylation analysis of Next Generation Sequencing data.

Author: Muhammad Ahmer Jamil with Contribution of Prof. Holger Frohlich and Priv.-Doz. Dr. Osman El-Maarri

Maintainer: Muhammad Ahmer Jamil <engr.ahmerjamil at gmail.com>

Citation (from within R, enter citation("MethTargetedNGS")):

Muhammad Ahmer Jamil with Contribution of Prof. Holger Frohlich and Priv.-Doz. Dr. Osman El-Maarri. MethTargetedNGS: Perform Methylation Analysis on Next Generation Sequencing Data. doi:10.18129/B9.bioc.MethTargetedNGS, R package version 1.45.0, https://bioconductor.org/packages/MethTargetedNGS.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("MethTargetedNGS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MethTargetedNGS")

Introduction to MethTargetedNGS	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Alignment, DataImport, Genetics, ResearchField, SequenceMatching, Sequencing, Software
Version	1.45.0
In Bioconductor since	BioC 3.1 (R-3.2) (11.5 years)
License	Artistic-2.0
Depends	R (>= 3.1.2), stringr, seqinr, gplots, Biostrings, pwalign
Imports	utils, graphics, stats
System Requirements	HMMER3
URL

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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MethTargetedNGS_1.45.0.tar.gz
Windows Binary (x86_64)	MethTargetedNGS_1.45.0.zip
macOS Binary (big-sur-x86_64)	MethTargetedNGS_1.45.0.tgz
macOS Binary (sonoma-arm64)	MethTargetedNGS_1.45.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MethTargetedNGS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MethTargetedNGS
Package Short Url	https://bioconductor.org/packages/MethTargetedNGS/
Package Downloads Report	Download Stats