MetaboAnnotatoR
This is the development version of MetaboAnnotatoR; for the stable release version, see MetaboAnnotatoR.
Automated Annotation of All-Ion Fragmentation LC-MS Metabolomic Features
Bioconductor version: Development (3.24)
Performs feature annotations on LC-MS All-ion fragmentation datasets using fragment ion libraries.
Author: Goncalo Graca [aut, cre] 
, Yuheng (Rene) Cai [aut], Timothy Ebbels [aut]
Maintainer: Goncalo Graca <ggraca22 at gmail.com>
citation("MetaboAnnotatoR")):Goncalo Graca, Yuheng Cai, Timothy Ebbels. MetaboAnnotatoR: Automated Annotation of All-Ion Fragmentation LC-MS Metabolomic Features. doi:10.18129/B9.bioc.MetaboAnnotatoR, R package version 1.1.2, https://bioconductor.org/packages/MetaboAnnotatoR.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("MetaboAnnotatoR")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MetaboAnnotatoR")| Generate metabolite library entries | HTML | R Script |
| Import an MS/MS library | HTML | R Script |
| Introduction to MetaboAnnotatoR | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | MassSpectrometry, Metabolomics, Software |
| Version | 1.1.2 |
| In Bioconductor since | BioC 3.23 (R-4.6) (< 6 months) |
| License | GPL-3 |
| Depends | R (>= 4.5.0), xcms (>= 3.0.0), MSnbase (>= 2.16.1), ProtGenerics |
| Imports | ggplot2 (>= 3.3.3), gridExtra (>= 2.3) |
| System Requirements | |
| URL | https://github.com/gggraca/MetaboAnnotatoR |
| Bug Reports | https://github.com/gggraca/MetaboAnnotatoR/issues |
See More
| Suggests | rmarkdown, knitr, testthat (>= 3.0.0), BiocStyle, MsDataHub |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MetaboAnnotatoR_1.1.2.tar.gz |
| Windows Binary (x86_64) | MetaboAnnotatoR_1.1.2.zip |
| macOS Binary (big-sur-x86_64) | MetaboAnnotatoR_1.1.2.tgz |
| macOS Binary (sonoma-arm64) | MetaboAnnotatoR_1.1.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MetaboAnnotatoR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MetaboAnnotatoR |
| Package Short Url | https://bioconductor.org/packages/MetaboAnnotatoR/ |
| Package Downloads Report | Download Stats |