Mergeomics
This is the development version of Mergeomics; for the stable release version, see Mergeomics.
All Bioconductor versions of Mergeomics
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3
Integrative network analysis of omics data
Bioconductor version: 3.24 · Package version: 1.41.0
The Mergeomics pipeline serves as a flexible framework for integrating multidimensional omics-disease associations, functional genomics, canonical pathways and gene-gene interaction networks to generate mechanistic hypotheses. It includes two main parts, 1) Marker set enrichment analysis (MSEA); 2) Weighted Key Driver Analysis (wKDA).
Author: Ville-Petteri Makinen, Le Shu, Yuqi Zhao, Zeyneb Kurt, Bin Zhang, Xia Yang
Maintainer: Zeyneb Kurt <zeynebkurt at gmail.com>
Citation
From within R, enter citation("Mergeomics"):
Ville-Petteri Makinen, Le Shu, Yuqi Zhao, Zeyneb Kurt, Bin Zhang, Xia Yang. Mergeomics: Integrative network analysis of omics data. doi:10.18129/B9.bioc.Mergeomics, R package version 1.41.0, https://bioconductor.org/packages/Mergeomics.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("Mergeomics")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.41.0 |
| License | GPL (>= 2) |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.3 (R-3.3) (10 years) |
| Downloads rank | 1214 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Software |
| Package Short Url | https://bioconductor.org/packages/Mergeomics/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Mergeomics")| Mergeomics | R Script | |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | Mergeomics_1.41.0.tar.gz |
| Windows binary (x86_64) | Mergeomics_1.41.0.zip |
| macOS binary (arm64) | Mergeomics_1.41.0.tgz |
| macOS binary (x86_64) | Mergeomics_1.41.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Mergeomics |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Mergeomics |
| Package Downloads Report | Download Stats |