MagellanNTK
This is the development version of MagellanNTK; to use it, please install the devel version of Bioconductor.
Configurable Shiny data-analysis workflows
Bioconductor version: Development (3.24)
MagellanNTK (Magellan Navigation ToolKit) is a collection of Shiny modules which provide the basis for a generic workflow manager for data processing tools with several steps. It works in combination with any package which implements data processing pipelines compliant with MagellanNTK such as Prostar2.
Author: Samuel Wieczorek [aut] 
, Thomas Burger [aut], Manon Gaudin [cre, aut]
Maintainer: Manon Gaudin <manon.gaudin at cea.fr>
citation("MagellanNTK")):Samuel Wieczorek, Thomas Burger, Manon Gaudin. MagellanNTK: Configurable Shiny data-analysis workflows. doi:10.18129/B9.bioc.MagellanNTK, R package version 0.99.34, https://bioconductor.org/packages/MagellanNTK.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("MagellanNTK")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MagellanNTK")| Build a pipeline with MagellanNTK | HTML |
| PipelineDemo User Manual – a vignette template to accompany data analysis pipelines deployed with MagellanNTK | HTML |
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | GUI, ShinyApps, Software, WorkflowStep |
| Version | 0.99.34 |
| In Bioconductor since | BioC 3.24 (R-4.6) |
| License | Artistic-2.0 |
| Depends | R (>= 4.5.0) |
| Imports | S4Vectors, methods, bs4Dash, DT, shiny, shinyEffects, htmlwidgets, shinyjs, sass, stats, utils, BiocGenerics, htmltools, crayon, stringr, waiter, MultiAssayExperiment, SummarizedExperiment, markdown, graphics |
| System Requirements | |
| URL | https://github.com/edyp-lab/MagellanNTK https://edyp-lab.github.io/MagellanNTK/ |
| Bug Reports | https://github.com/edyp-lab/MagellanNTK/issues |
See More
| Suggests | shinyjqui, BiocStyle, testthat, shinytest2, shinyTree, knitr, colourpicker, gtools, XML, R.utils, RColorBrewer, openxlsx, shinyvalidate, shinyAce, rclipboard, shinyWidgets, KernSmooth, MASS, boot, class, cluster, foreign, mgcv, nlme, nnet, rpart, spatial, survival |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/MagellanNTK |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MagellanNTK |
| Package Short Url | https://bioconductor.org/packages/MagellanNTK/ |
| Package Downloads Report | Download Stats |