MSstatsResponse
This is the development version of MSstatsResponse; for the stable release version, see MSstatsResponse.
All Bioconductor versions of MSstatsResponse
3.24 (devel), 3.23 (release), 3.22
Statistical Methods for Chemoproteomics Dose-Response Analysis
Bioconductor version: 3.24 · Package version: 1.3.4
Tools for detecting drug-protein interactions and estimating IC50 values from chemoproteomics data. Implements semi-parametric isotonic regression, bootstrapping, and curve fitting to evaluate compound effects on protein abundance.
Author: Sarah Szvetecz [aut, cre], Tony Wu [aut], Devon Kohler [aut], Olga Vitek [aut]
Maintainer: Sarah Szvetecz <szvetecz.s at northeastern.edu>
Citation
From within R, enter citation("MSstatsResponse"):
Sarah Szvetecz, Tony Wu, Devon Kohler, Olga Vitek. MSstatsResponse: Statistical Methods for Chemoproteomics Dose-Response Analysis. doi:10.18129/B9.bioc.MSstatsResponse, R package version 1.3.4, https://bioconductor.org/packages/MSstatsResponse.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("MSstatsResponse")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.3.4 |
| License | Artistic-2.0 |
| URL | https://github.com/Vitek-Lab/MSstatsResponse |
| Bug Reports | https://github.com/Vitek-Lab/MSstatsResponse/issues |
| Last updated | 2026-09-21 |
| In Bioconductor since | BioC 3.22 (R-4.5) (less than a year) |
| Downloads rank | 2112 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | MassSpectrometry, Proteomics, Regression, Software, StatisticalMethod |
| Package Short Url | https://bioconductor.org/packages/MSstatsResponse/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MSstatsResponse")| MSstatsResponse: A package for detecting drug-protein interactions in dose-response mass spectrometry-based proteomics experiments | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | MSstatsResponse_1.3.4.tar.gz |
| macOS binary (arm64) | MSstatsResponse_1.3.4.tgz |
| macOS binary (x86_64) | MSstatsResponse_1.3.4.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MSstatsResponse |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MSstatsResponse |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.5.0)
Imports: BiocParallel, ggplot2, dplyr, stats, parallel, data.table, stringr, plotly, utils
Suggests: MSstats, MSstatsTMT, tidyverse, boot, purrr, gridExtra, knitr, rmarkdown, BiocStyle, testthat
Reverse dependencies
Imports Me (1): MSstatsShiny