MEAT

This is the development version of MEAT; for the stable release version, see MEAT.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11

Muscle Epigenetic Age Test

Bioconductor version: Development (3.24)

This package estimates epigenetic age in skeletal muscle, using DNA methylation data generated with the Illumina Infinium technology (HM27, HM450 and HMEPIC).

Author: Sarah Voisin [aut, cre] ORCID: 0000-0002-4074-7083 , Steve Horvath [ctb] ORCID: 0000-0002-4110-3589

Maintainer: Sarah Voisin <sarah.voisin.aeris at gmail.com>

Citation (from within R, enter citation("MEAT")):

Sarah Voisin. MEAT: Muscle Epigenetic Age Test. doi:10.18129/B9.bioc.MEAT, R package version 1.25.0, https://bioconductor.org/packages/MEAT.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("MEAT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MEAT")

MEAT	HTML	R Script
Reference Manual	PDF
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	BiomedicalInformatics, DNAMethylation, Epigenetics, MethylationArray, Microarray, Normalization, Preprocessing, Software
Version	1.25.0
In Bioconductor since	BioC 3.11 (R-4.0) (6.5 years)
License	MIT + file LICENSE
Depends	R (>= 4.0)
Imports	impute (>= 1.58), dynamicTreeCut (>= 1.63), glmnet (>= 2.0), grDevices, graphics, stats, utils, stringr, tibble, RPMM (>= 1.25), minfi (>= 1.30), dplyr, SummarizedExperiment, wateRmelon
System Requirements
URL	https://github.com/sarah-voisin/MEAT
Bug Reports	https://github.com/sarah-voisin/MEAT/issues

Suggests	knitr, markdown, rmarkdown, BiocStyle, testthat (>= 2.1.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MEAT_1.25.0.tar.gz
Windows Binary (x86_64)	MEAT_1.25.0.zip
macOS Binary (big-sur-x86_64)	MEAT_1.25.0.tgz
macOS Binary (sonoma-arm64)	MEAT_1.25.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MEAT
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MEAT
Package Short Url	https://bioconductor.org/packages/MEAT/
Package Downloads Report	Download Stats