MEAL
This is the development version of MEAL; for the stable release version, see MEAL.
All Bioconductor versions of MEAL
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2
Perform methylation analysis
Bioconductor version: 3.24 · Package version: 1.43.0
Package to integrate methylation and expression data. It can also perform methylation or expression analysis alone. Several plotting functionalities are included as well as a new region analysis based on redundancy analysis. Effect of SNPs on a region can also be estimated.
Author: Carlos Ruiz-Arenas [aut, cre], Juan R. Gonzalez [aut]
Maintainer: Xavier Escribà Montagut <xavier.escriba at isglobal.org>
Citation
From within R, enter citation("MEAL"):
Carlos Ruiz-Arenas, Juan R. Gonzalez. MEAL: Perform methylation analysis. doi:10.18129/B9.bioc.MEAL, R package version 1.43.0, https://bioconductor.org/packages/MEAL.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("MEAL")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.43.0 |
| License | Artistic-2.0 |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.2 (R-3.2) (10 years) |
| Downloads rank | 608 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DNAMethylation, Microarray, Software, WholeGenome |
| Package Short Url | https://bioconductor.org/packages/MEAL/ |
Documentation
| Reference Manual | |
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | MEAL_1.43.0.tar.gz |
| Windows binary (x86_64) | MEAL_1.43.0.zip |
| macOS binary (arm64) | MEAL_1.43.0.tgz |
| macOS binary (x86_64) | MEAL_1.43.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MEAL |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MEAL |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.6.0), Biobase, MultiDataSet
Imports: GenomicRanges, limma, vegan, BiocGenerics, minfi, IRanges, S4Vectors, methods, parallel, ggplot2 (>= 2.0.0), permute, Gviz, missMethyl, isva, SummarizedExperiment, SmartSVA, graphics, stats, utils, matrixStats
Suggests: testthat, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, IlluminaHumanMethylation450kanno.ilmn12.hg19, knitr, minfiData, BiocStyle, rmarkdown, brgedata