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MBQN

This is the development version of MBQN; for the stable release version, see MBQN.

Mean/Median-balanced quantile normalization


Bioconductor version: Development (3.19)

Modified quantile normalization for omics or other matrix-like data distorted in location and scale.

Author: Eva Brombacher [aut, cre] , Clemens Kreutz [aut, ctb] , Ariane Schad [aut, ctb]

Maintainer: Eva Brombacher <brombach at imbi.uni-freiburg.de>

Citation (from within R, enter citation("MBQN")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MBQN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MBQN")
MBQN Package HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Normalization, Preprocessing, Proteomics, Software
Version 2.15.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License GPL-3 + file LICENSE
Depends R (>= 3.6)
Imports stats, graphics, utils, limma(>= 3.30.13), SummarizedExperiment(>= 1.10.0), preprocessCore(>= 1.36.0), BiocFileCache, rappdirs, xml2, RCurl, ggplot2, PairedData, rmarkdown
System Requirements
URL https://github.com/arianeschad/mbqn
Bug Reports https://github.com/arianeschad/MBQN/issues
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MBQN_2.15.0.tar.gz
Windows Binary MBQN_2.15.0.zip
macOS Binary (x86_64) MBQN_2.15.0.tgz
macOS Binary (arm64) MBQN_2.15.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MBQN
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MBQN
Bioc Package Browser https://code.bioconductor.org/browse/MBQN/
Package Short Url https://bioconductor.org/packages/MBQN/
Package Downloads Report Download Stats