LoomExperiment

DOI: 10.18129/B9.bioc.LoomExperiment    

This is the development version of LoomExperiment; for the stable release version, see LoomExperiment.

LoomExperiment container

Bioconductor version: Development (3.15)

The LoomExperiment package provide a means to easily convert the Bioconductor "Experiment" classes to loom files and vice versa.

Author: Martin Morgan, Daniel Van Twisk

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("LoomExperiment")):

Installation

To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("LoomExperiment")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews DataImport, DataRepresentation, ImmunoOncology, Infrastructure, SingleCell, Software
Version 1.13.0
In Bioconductor since BioC 3.8 (R-3.5) (3 years)
License Artistic-2.0
Depends R (>= 3.5.0), S4Vectors, SingleCellExperiment, SummarizedExperiment, methods, rhdf5, BiocIO
Imports DelayedArray, GenomicRanges, HDF5Array, Matrix, stats, stringr, utils
LinkingTo
Suggests testthat, BiocStyle, knitr, rmarkdown, reticulate
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me hca
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/LoomExperiment
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/LoomExperiment
Package Short Url https://bioconductor.org/packages/LoomExperiment/
Package Downloads Report Download Stats

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