LRDE
This is the development version of LRDE; for the stable release version, see LRDE.
Differential Expression Analysis with Long Read RNA-Seq Data
Bioconductor version: Development (3.24)
Provides hurdle negative binomial models for differential expression analysis with long-read RNA-Seq data.
Author: Ziyang Liu [aut, cre] 
, Hongxu Ding [aut, fnd], Xiaoxiao Sun [aut, fnd], Ziyuan Wang [aut, fnd]
Maintainer: Ziyang Liu <jacobleo773 at gmail.com>
citation("LRDE")):Ziyang Liu, Hongxu Ding, Xiaoxiao Sun, Ziyuan Wang. LRDE: Differential Expression Analysis with Long Read RNA-Seq Data. doi:10.18129/B9.bioc.LRDE, R package version 1.1.2, https://bioconductor.org/packages/LRDE.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("LRDE")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("LRDE")| Introduction to LRDE | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DifferentialExpression, GeneExpression, LongRead, RNASeq, Regression, Sequencing, Software |
| Version | 1.1.2 |
| In Bioconductor since | BioC 3.23 (R-4.6) (< 6 months) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.5.0) |
| Imports | stats, SummarizedExperiment |
| System Requirements | |
| URL | https://github.com/ziyang773/LRDE |
| Bug Reports | https://github.com/ziyang773/LRDE/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, BiocGenerics, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | LRDE_1.1.2.tar.gz |
| Windows Binary (x86_64) | LRDE_1.1.2.zip |
| macOS Binary (big-sur-x86_64) | LRDE_1.1.2.tgz |
| macOS Binary (sonoma-arm64) | LRDE_1.1.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/LRDE |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/LRDE |
| Package Short Url | https://bioconductor.org/packages/LRDE/ |
| Package Downloads Report | Download Stats |