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KCsmart

This is the development version of KCsmart; for the stable release version, see KCsmart.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Multi sample aCGH analysis package using kernel convolution


Bioconductor version: Development (3.24)

Multi sample aCGH analysis package using kernel convolution

Author: Jorma de Ronde, Christiaan Klijn, Arno Velds

Maintainer: Jorma de Ronde <j.d.ronde at nki.nl>

Citation (from within R, enter citation("KCsmart")):

Jorma de Ronde, Christiaan Klijn, Arno Velds. KCsmart: Multi sample aCGH analysis package using kernel convolution. doi:10.18129/B9.bioc.KCsmart, R package version 2.71.0, https://bioconductor.org/packages/KCsmart.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("KCsmart")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("KCsmart")
KCsmart example session PDF R Script
Reference ManualPDF

Details

biocViews CopyNumberVariation, Microarray, Software, Visualization, aCGH
Version2.71.0
In Bioconductor sinceBioC 2.3 (R-2.8) (18 years)
License GPL-3
Depends siggenes, multtest, KernSmooth
Imports methods, BiocGenerics
System Requirements
URL
See More
Suggests
Linking To
Enhances Biobase, CGHbase
Depends On Me
Imports Me
Suggests Me
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Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package KCsmart_2.71.0.tar.gz
Windows Binary (x86_64) KCsmart_2.71.0.zip
macOS Binary (big-sur-x86_64) KCsmart_2.71.0.tgz
macOS Binary (sonoma-arm64) KCsmart_2.71.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/KCsmart
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/KCsmart
Package Short Url https://bioconductor.org/packages/KCsmart/
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