IntEREst
This is the development version of IntEREst; for the stable release version, see IntEREst.
All Bioconductor versions of IntEREst
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5
Intron-Exon Retention Estimator
Bioconductor version: 3.24 · Package version: 1.37.0
This package performs Intron-Exon Retention analysis on RNA-seq data (.bam files).
Author: Ali Oghabian <Ali.Oghabian at Helsinki.Fi>, Dario Greco <dario.greco at helsinki.fi>, Mikko Frilander <Mikko.Frilander at helsinki.fi>
Maintainer: Ali Oghabian <Ali.Oghabian at Helsinki.Fi>
Citation
From within R, enter citation("IntEREst"):
Ali Oghabian, Dario Greco, Mikko Frilander. IntEREst: Intron-Exon Retention Estimator. doi:10.18129/B9.bioc.IntEREst, R package version 1.37.0, https://bioconductor.org/packages/IntEREst.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("IntEREst")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.37.0 |
| License | GPL-2 |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.5 (R-3.4) (9 years) |
| Downloads rank | 759 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Alignment, AlternativeSplicing, Coverage, DifferentialExpression, DifferentialSplicing, ImmunoOncology, Normalization, RNASeq, Sequencing, Software |
| Package Short Url | https://bioconductor.org/packages/IntEREst/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("IntEREst")| IntEREst | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | IntEREst_1.37.0.tar.gz |
| Windows binary (x86_64) | IntEREst_1.37.0.zip |
| macOS binary (arm64) | IntEREst_1.37.0.tgz |
| macOS binary (x86_64) | IntEREst_1.37.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/IntEREst |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/IntEREst |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.5.0), GenomicRanges, Rsamtools, SummarizedExperiment, edgeR, S4Vectors, GenomicFiles
Imports: seqLogo, Biostrings, GenomicFeatures (>= 1.39.4), txdbmaker, IRanges, seqinr, graphics, grDevices, stats, utils, grid, methods, DBI, RMariaDB, GenomicAlignments, BiocParallel, BiocGenerics, DEXSeq, DESeq2
Suggests: clinfun, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19