• Home
• Bioconductor 3.24
• Software Packages
• HiCool (development version)

HiCool

This is the development version of HiCool; for the stable release version, see HiCool.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17

HiCool

DOI: 10.18129/B9.bioc.HiCool

Bioconductor version: Development (3.24)

HiCool provides an R interface to process and normalize Hi-C paired-end fastq reads into .(m)cool files. .(m)cool is a compact, indexed HDF5 file format specifically tailored for efficiently storing HiC-based data. On top of processing fastq reads, HiCool provides a convenient reporting function to generate shareable reports summarizing Hi-C experiments and including quality controls.

Author: Jacques Serizay [aut, cre]

Maintainer: Jacques Serizay <jacquesserizay at gmail.com>

Citation (from within R, enter citation("HiCool")):

Jacques Serizay. HiCool: HiCool. doi:10.18129/B9.bioc.HiCool, R package version 1.13.2, https://bioconductor.org/packages/HiCool.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("HiCool")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiCool")

Details

Package Archives

Follow Installation instructions to use this package in your R session.