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HELP

This is the development version of HELP; for the stable release version, see HELP.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Tools for HELP data analysis


Bioconductor version: Development (3.24)

The package contains a modular pipeline for analysis of HELP microarray data, and includes graphical and mathematical tools with more general applications.

Author: Reid F. Thompson <reid.thompson at gmail.com>, John M. Greally <john.greally at einstein.yu.edu>, with contributions from Mark Reimers <mreimers at vcu.edu>

Maintainer: Reid F. Thompson <reid.thompson at gmail.com>

Citation (from within R, enter citation("HELP")):

Reid F. Thompson, John M. Greally, with contributions from Mark Reimers. HELP: Tools for HELP data analysis. doi:10.18129/B9.bioc.HELP, R package version 1.71.0, https://bioconductor.org/packages/HELP.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("HELP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HELP")
1. Primer PDF R Script
Reference ManualPDF

Details

biocViews CpGIsland, DNAMethylation, DataImport, Microarray, Preprocessing, QualityControl, Software, TwoChannel, Visualization
Version1.71.0
In Bioconductor sinceBioC 2.3 (R-2.8) (18 years)
License GPL (>= 2)
Depends R (>= 2.8.0), stats, graphics, grDevices, Biobase, methods
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HELP_1.71.0.tar.gz
Windows Binary (x86_64) HELP_1.71.0.zip
macOS Binary (big-sur-x86_64) HELP_1.71.0.tgz
macOS Binary (sonoma-arm64) HELP_1.71.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/HELP
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/HELP
Package Short Url https://bioconductor.org/packages/HELP/
Package Downloads ReportDownload Stats