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Guitar

This is the development version of Guitar; for the stable release version, see Guitar.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2

Guitar


Bioconductor version: Development (3.24)

The package is designed for visualization of RNA-related genomic features with respect to the landmarks of RNA transcripts, i.e., transcription starting site, start codon, stop codon and transcription ending site.

Author: Xiao Du, Hui Liu, Lin Zhang, Jia Meng

Maintainer: Jia Meng <jia.meng at xjtlu.edu.cn>

Citation (from within R, enter citation("Guitar")):

Xiao Du, Hui Liu, Lin Zhang, Jia Meng. Guitar: Guitar. doi:10.18129/B9.bioc.Guitar, R package version 2.29.0, https://bioconductor.org/packages/Guitar.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("Guitar")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Guitar")
Guitar PDF R Script
Reference ManualPDF
NEWSText

Details

biocViews Alignment, DataImport, MethylSeq, QualityControl, RNASeq, Sequencing, Software, SplicedAlignment, Transcription
Version2.29.0
In Bioconductor sinceBioC 3.2 (R-3.2) (11 years)
License GPL-2
Depends GenomicFeatures, rtracklayer, AnnotationDbi, GenomicRanges, magrittr, ggplot2, methods, stats, utils, knitr, dplyr
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Guitar_2.29.0.tar.gz
Windows Binary (x86_64) Guitar_2.29.0.zip (64-bit only)
macOS Binary (big-sur-x86_64) Guitar_2.29.0.tgz
macOS Binary (sonoma-arm64) Guitar_2.29.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/Guitar
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/Guitar
Package Short Url https://bioconductor.org/packages/Guitar/
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