GeneRegionScan
This is the development version of GeneRegionScan; for the stable release version, see GeneRegionScan.
All Bioconductor versions of GeneRegionScan
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5
GeneRegionScan
Bioconductor version: 3.24 · Package version: 1.69.0
A package with focus on analysis of discrete regions of the genome. This package is useful for investigation of one or a few genes using Affymetrix data, since it will extract probe level data using the Affymetrix Power Tools application and wrap these data into a ProbeLevelSet. A ProbeLevelSet directly extends the expressionSet, but includes additional information about the sequence of each probe and the probe set it is derived from. The package includes a number of functions used for plotting these probe level data as a function of location along sequences of mRNA-strands. This can be used for analysis of variable splicing, and is especially well suited for use with exon-array data.
Author: Lasse Folkersen, Diego Diez
Maintainer: Lasse Folkersen <lasfol at cbs.dtu.dk>
Citation
From within R, enter citation("GeneRegionScan"):
Lasse Folkersen, Diego Diez. GeneRegionScan: GeneRegionScan. doi:10.18129/B9.bioc.GeneRegionScan, R package version 1.69.0, https://bioconductor.org/packages/GeneRegionScan.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("GeneRegionScan")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.69.0 |
| License | GPL (>= 2) |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 2.5 or earlier (R-2.10) (16 years) |
| Downloads rank | 406 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, Microarray, OneChannel, SNP, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/GeneRegionScan/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GeneRegionScan")| GeneRegionScan | R Script | |
| Reference Manual |
Download
Follow the installation instructions to use this package in your R session.
| Source package | GeneRegionScan_1.69.0.tar.gz |
| Windows binary (x86_64) | GeneRegionScan_1.69.0.zip |
| macOS binary (arm64) | GeneRegionScan_1.69.0.tgz |
| macOS binary (x86_64) | GeneRegionScan_1.69.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GeneRegionScan |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GeneRegionScan |
| Package Downloads Report | Download Stats |
Dependencies
Depends: methods, Biobase (>= 2.5.5), Biostrings
Imports: S4Vectors (>= 0.9.25), Biobase (>= 2.5.5), affxparser, RColorBrewer, Biostrings
Suggests: BSgenome, affy, AnnotationDbi