FlowSOM

DOI: 10.18129/B9.bioc.FlowSOM    

This is the development version of FlowSOM; to use it, please install the devel version of Bioconductor.

Using self-organizing maps for visualization and interpretation of cytometry data

Bioconductor version: Development (3.10)

FlowSOM offers visualization options for cytometry data, by using Self-Organizing Map clustering and Minimal Spanning Trees.

Author: Sofie Van Gassen [aut, cre], Britt Callebaut [aut], Yvan Saeys [aut]

Maintainer: Sofie Van Gassen <sofie.vangassen at ugent.be>

Citation (from within R, enter citation("FlowSOM")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("FlowSOM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("FlowSOM")

 

PDF R Script FlowSOM
PDF   Reference Manual
Text   NEWS

Details

biocViews CellBasedAssays, CellBiology, Clustering, FlowCytometry, Software, Visualization
Version 1.17.3
In Bioconductor since BioC 3.1 (R-3.2) (4.5 years)
License GPL (>= 2)
Depends R (>= 3.6), igraph
Imports stats, utils, flowCore, ConsensusClusterPlus, BiocGenerics, tsne, flowWorkspace, CytoML, XML, RColorBrewer
LinkingTo
Suggests BiocStyle
SystemRequirements
Enhances
URL http://www.r-project.org http://dambi.ugent.be
Depends On Me
Imports Me CATALYST, cytofast, diffcyt, MetaCyto
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package FlowSOM_1.17.3.tar.gz
Windows Binary FlowSOM_1.17.3.zip
Mac OS X 10.11 (El Capitan) FlowSOM_1.17.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/FlowSOM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/FlowSOM
Package Short Url http://bioconductor.org/packages/FlowSOM/
Package Downloads Report Download Stats

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