DNAcopy
This is the development version of DNAcopy; for the stable release version, see DNAcopy.
DNA Copy Number Data Analysis
Bioconductor version: Development (3.20)
Implements the circular binary segmentation (CBS) algorithm to segment DNA copy number data and identify genomic regions with abnormal copy number.
Author: Venkatraman E. Seshan, Adam Olshen
Maintainer: Venkatraman E. Seshan <seshanv at mskcc.org>
Citation (from within R, enter
citation("DNAcopy")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("DNAcopy")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DNAcopy")
DNAcopy | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | CopyNumberVariation, Microarray, Software |
Version | 1.79.0 |
In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19.5 years) |
License | GPL (>= 2) |
Depends | |
Imports | |
System Requirements | |
URL |
See More
Suggests | |
Linking To | |
Enhances | |
Depends On Me | CGHcall, cghMCR, CRImage, PureCN, CSclone, ParDNAcopy, saasCNV |
Imports Me | ADaCGH2, AneuFinder, CNAnorm, cn.farms, CNVrd2, GWASTools, maftools, MDTS, MEDIPS, MinimumDistance, QDNAseq, Repitools, SCOPE, jointseg, PSCBS |
Suggests Me | cn.mops, CopyNumberPlots, fastseg, nullranges, sesame, ACNE, aroma.cn, aroma.core, calmate |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | DNAcopy_1.79.0.tar.gz |
Windows Binary (x86_64) | DNAcopy_1.79.0.zip (64-bit only) |
macOS Binary (x86_64) | DNAcopy_1.79.0.tgz |
macOS Binary (arm64) | DNAcopy_1.79.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/DNAcopy |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DNAcopy |
Bioc Package Browser | https://code.bioconductor.org/browse/DNAcopy/ |
Package Short Url | https://bioconductor.org/packages/DNAcopy/ |
Package Downloads Report | Download Stats |