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DNABarcodes

This is the development version of DNABarcodes; for the stable release version, see DNABarcodes.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2

A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments

DOI: 10.18129/B9.bioc.DNABarcodes

Bioconductor version: Development (3.24)

The package offers a function to create DNA barcode sets capable of correcting insertion, deletion, and substitution errors. Existing barcodes can be analysed regarding their minimal, maximal and average distances between barcodes. Finally, reads that start with a (possibly mutated) barcode can be demultiplexed, i.e., assigned to their original reference barcode.

Author: Tilo Buschmann <tilo.buschmann.ac at gmail.com>

Maintainer: Tilo Buschmann <tilo.buschmann.ac at gmail.com>

Citation (from within R, enter citation("DNABarcodes")):

Tilo Buschmann. DNABarcodes: A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments. doi:10.18129/B9.bioc.DNABarcodes, R package version 1.43.0, https://bioconductor.org/packages/DNABarcodes.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("DNABarcodes")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DNABarcodes")

Details

Package Archives

Follow Installation instructions to use this package in your R session.