ChIPsim
This is the development version of ChIPsim; for the stable release version, see ChIPsim.
Simulation of ChIP-seq experiments
Bioconductor version: Development (3.20)
A general framework for the simulation of ChIP-seq data. Although currently focused on nucleosome positioning the package is designed to support different types of experiments.
Author: Peter Humburg
Maintainer: Peter Humburg <Peter.Humburg at gmail.com>
Citation (from within R, enter
citation("ChIPsim")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ChIPsim")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ChIPsim")
Simulating ChIP-seq experiments | R Script | |
Reference Manual |
Details
biocViews | ChIPSeq, Infrastructure, Software |
Version | 1.59.0 |
In Bioconductor since | BioC 2.5 (R-2.10) (15 years) |
License | GPL (>= 2) |
Depends | Biostrings(>= 2.29.2) |
Imports | IRanges, XVector, Biostrings, ShortRead, graphics, methods, stats, utils |
System Requirements | |
URL |
See More
Suggests | actuar, zoo |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | ChIPsim_1.59.0.tar.gz |
Windows Binary | ChIPsim_1.59.0.zip (64-bit only) |
macOS Binary (x86_64) | ChIPsim_1.59.0.tgz |
macOS Binary (arm64) | ChIPsim_1.59.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/ChIPsim |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ChIPsim |
Bioc Package Browser | https://code.bioconductor.org/browse/ChIPsim/ |
Package Short Url | https://bioconductor.org/packages/ChIPsim/ |
Package Downloads Report | Download Stats |