ChIPexoQual
This is the development version of ChIPexoQual; for the stable release version, see ChIPexoQual.
All Bioconductor versions of ChIPexoQual
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5
ChIPexoQual
Bioconductor version: 3.24 · Package version: 1.37.0
Package with a quality control pipeline for ChIP-exo/nexus data.
Author: Rene Welch, Dongjun Chung, Sunduz Keles
Maintainer: Rene Welch <welch at stat.wisc.edu>
Citation
From within R, enter citation("ChIPexoQual"):
Rene Welch, Dongjun Chung, Sunduz Keles. ChIPexoQual: ChIPexoQual. doi:10.18129/B9.bioc.ChIPexoQual, R package version 1.37.0, https://bioconductor.org/packages/ChIPexoQual.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("ChIPexoQual")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.37.0 |
| License | GPL (>=2) |
| URL | https:github.com/keleslab/ChIPexoQual |
| Bug Reports | https://github.com/welch16/ChIPexoQual/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.5 (R-3.4) (9 years) |
| Downloads rank | 812 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Alignment, ChIPSeq, Coverage, QualityControl, Sequencing, Software, Transcription, Visualization |
| Package Short Url | https://bioconductor.org/packages/ChIPexoQual/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ChIPexoQual")| ChIPexoQual: A quality control pipeline for ChIP-exo/nexus data. | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | ChIPexoQual_1.37.0.tar.gz |
| Windows binary (x86_64) | ChIPexoQual_1.37.0.zip |
| macOS binary (arm64) | ChIPexoQual_1.37.0.tgz |
| macOS binary (x86_64) | ChIPexoQual_1.37.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ChIPexoQual |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ChIPexoQual |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.5.0), GenomicAlignments (>= 1.45.1)
Imports: methods, utils, Seqinfo, stats, BiocParallel, GenomicRanges (>= 1.61.1), ggplot2 (>= 1.0), data.table (>= 1.9.6), Rsamtools (>= 2.25.1), IRanges (>= 1.6), S4Vectors (>= 0.8), biovizBase (>= 1.18), broom (>= 0.4), RColorBrewer (>= 1.1), dplyr (>= 0.5), scales (>= 0.4.0), viridis (>= 0.3), hexbin (>= 1.27), rmarkdown
Suggests: ChIPexoQualExample (>= 0.99.1), knitr (>= 1.10), BiocStyle, gridExtra (>= 2.2), testthat