• Home
• Bioconductor 3.24
• Software Packages
• CNVrd2 (development version)

CNVrd2

This is the development version of CNVrd2; for the stable release version, see CNVrd2.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13

CNVrd2: a read depth-based method to detect and genotype complex common copy number variants from next generation sequencing data.

DOI: 10.18129/B9.bioc.CNVrd2

Bioconductor version: Development (3.24)

CNVrd2 uses next-generation sequencing data to measure human gene copy number for multiple samples, indentify SNPs tagging copy number variants and detect copy number polymorphic genomic regions.

Author: Hoang Tan Nguyen, Tony R Merriman and Mik Black

Maintainer: Hoang Tan Nguyen <hoangtannguyenvn at gmail.com>

Citation (from within R, enter citation("CNVrd2")):

Hoang Tan Nguyen, Tony R Merriman and Mik Black. CNVrd2: CNVrd2: a read depth-based method to detect and genotype complex common copy number variants from next generation sequencing data. doi:10.18129/B9.bioc.CNVrd2, R package version 1.51.0, https://bioconductor.org/packages/CNVrd2.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("CNVrd2")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNVrd2")

Details

Package Archives

Follow Installation instructions to use this package in your R session.