CGHbase

This is the development version of CGHbase; for the stable release version, see CGHbase.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

CGHbase: Base functions and classes for arrayCGH data analysis.

Bioconductor version: Development (3.24)

Contains functions and classes that are needed by arrayCGH packages.

Author: Sjoerd Vosse, Mark van de Wiel

Maintainer: Mark van de Wiel <mark.vdwiel at vumc.nl>

Citation (from within R, enter citation("CGHbase")):

Sjoerd Vosse, Mark van de Wiel. CGHbase: CGHbase: Base functions and classes for arrayCGH data analysis. doi:10.18129/B9.bioc.CGHbase, R package version 1.73.0, https://bioconductor.org/packages/CGHbase.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("CGHbase")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CopyNumberVariation, Infrastructure, Microarray, Software
Version	1.73.0
In Bioconductor since	BioC 2.3 (R-2.8) (18 years)
License	GPL
Depends	R (>= 2.10), methods, Biobase (>= 2.5.5), marray
Imports
System Requirements
URL	https://github.com/tgac-vumc/CGHbase
Bug Reports	https://github.com/tgac-vumc/CGHbase/issues

Suggests
Linking To
Enhances
Depends On Me	CGHcall, CGHnormaliter, CGHregions, GeneBreak
Imports Me	CGHnormaliter, QDNAseq
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CGHbase_1.73.0.tar.gz
Windows Binary (x86_64)	CGHbase_1.73.0.zip
macOS Binary (big-sur-x86_64)	CGHbase_1.73.0.tgz
macOS Binary (sonoma-arm64)	CGHbase_1.73.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CGHbase
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CGHbase
Package Short Url	https://bioconductor.org/packages/CGHbase/
Package Downloads Report	Download Stats