CBNplot
This is the development version of CBNplot; for the stable release version, see CBNplot.
All Bioconductor versions of CBNplot
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17
plot bayesian network inferred from gene expression data based on enrichment analysis results
Bioconductor version: 3.24 · Package version: 1.13.0
This package provides the visualization of bayesian network inferred from gene expression data. The networks are based on enrichment analysis results inferred from packages including clusterProfiler and ReactomePA. The networks between pathways and genes inside the pathways can be inferred and visualized.
Author: Noriaki Sato [cre, aut]
Maintainer: Noriaki Sato <nori at hgc.jp>
Citation
From within R, enter citation("CBNplot"):
Noriaki Sato. CBNplot: plot bayesian network inferred from gene expression data based on enrichment analysis results. doi:10.18129/B9.bioc.CBNplot, R package version 1.13.0, https://bioconductor.org/packages/CBNplot.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("CBNplot")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.13.0 |
| License | Artistic-2.0 |
| URL | https://github.com/noriakis/CBNplot |
| Bug Reports | https://github.com/noriakis/CBNplot/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.17 (R-4.3) (3 years) |
| Downloads rank | 1566 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Bayesian, GeneExpression, GeneSetEnrichment, Network, NetworkEnrichment, NetworkInference, Pathways, Reactome, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/CBNplot/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CBNplot")| CBNplot | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | CBNplot_1.13.0.tar.gz |
| Windows binary (x86_64) | CBNplot_1.13.0.zip |
| macOS binary (arm64) | CBNplot_1.13.0.tgz |
| macOS binary (x86_64) | CBNplot_1.13.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CBNplot |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CBNplot |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.3.0)
Imports: ggplot2, magrittr, graphite, ggraph, igraph, bnlearn (>= 4.7), patchwork, org.Hs.eg.db, clusterProfiler, utils, enrichplot, reshape2, ggforce, dplyr, tidyr, stringr, depmap, ExperimentHub, Rmpfr, graphlayouts, BiocFileCache, ggdist, purrr, pvclust, stats, rlang
Suggests: knitr, arules, concaveman, ReactomePA, bnviewer, rmarkdown, withr, BiocStyle, testthat (>= 3.0.0)