BEAT

This is the development version of BEAT; for the stable release version, see BEAT.

BEAT - BS-Seq Epimutation Analysis Toolkit


Bioconductor version: Development (3.20)

Model-based analysis of single-cell methylation data

Author: Kemal Akman <akman at mpipz.mpg.de>

Maintainer: Kemal Akman <akman at mpipz.mpg.de>

Citation (from within R, enter citation("BEAT")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BEAT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BEAT")
Analysing single-cell BS-Seq data with the "BEAT" package PDF R Script
Reference Manual PDF

Details

biocViews DNAMethylation, Epigenetics, Genetics, ImmunoOncology, MethylSeq, Software
Version 1.43.0
In Bioconductor since BioC 2.14 (R-3.1) (10.5 years)
License LGPL (>= 3.0)
Depends R (>= 2.13.0)
Imports GenomicRanges, ShortRead, Biostrings, BSgenome
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BEAT_1.43.0.tar.gz
Windows Binary (x86_64) BEAT_1.43.0.zip (64-bit only)
macOS Binary (x86_64) BEAT_1.43.0.tgz
macOS Binary (arm64) BEAT_1.43.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BEAT
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BEAT
Bioc Package Browser https://code.bioconductor.org/browse/BEAT/
Package Short Url https://bioconductor.org/packages/BEAT/
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