BEAT

This is the development version of BEAT; for the stable release version, see BEAT.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14

BEAT - BS-Seq Epimutation Analysis Toolkit

Bioconductor version: Development (3.24)

Model-based analysis of single-cell methylation data

Author: Kemal Akman <akman at mpipz.mpg.de>

Maintainer: Kemal Akman <akman at mpipz.mpg.de>

Citation (from within R, enter citation("BEAT")):

Kemal Akman. BEAT: BEAT - BS-Seq Epimutation Analysis Toolkit. doi:10.18129/B9.bioc.BEAT, R package version 1.51.0, https://bioconductor.org/packages/BEAT.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("BEAT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BEAT")

Analysing single-cell BS-Seq data with the "BEAT" package	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DNAMethylation, Epigenetics, Genetics, ImmunoOncology, MethylSeq, Software
Version	1.51.0
In Bioconductor since	BioC 2.14 (R-3.1) (12.5 years)
License	LGPL (>= 3.0)
Depends	R (>= 2.13.0)
Imports	GenomicRanges, ShortRead, Biostrings, BSgenome
System Requirements
URL

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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BEAT_1.51.0.tar.gz
Windows Binary (x86_64)	BEAT_1.51.0.zip
macOS Binary (big-sur-x86_64)	BEAT_1.51.0.tgz
macOS Binary (sonoma-arm64)	BEAT_1.51.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BEAT
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BEAT
Package Short Url	https://bioconductor.org/packages/BEAT/
Package Downloads Report	Download Stats