Aerith
This is the development version of Aerith; for the stable release version, see Aerith.
Visualization and Annotation of Isotopic Enrichment Patterns of Peptides and Metabolites with Stable Isotope Labeling from Proteomics and Metabolomics
Bioconductor version: Development (3.24)
Visualisation of peptide isotopic peaks and SIP peptide spectra match (PSM). Filtration of high quality PSM. Accurate isotopic abundance calculation of peptide and metabolites. Visualisation of SIP proteomics results.
Maintainer: Yi Xiong <yixiong at ou.edu>
citation("Aerith")):Yi Xiong. Aerith: Visualization and Annotation of Isotopic Enrichment Patterns of Peptides and Metabolites with Stable Isotope Labeling from Proteomics and Metabolomics. doi:10.18129/B9.bioc.Aerith, R package version 1.1.3, https://bioconductor.org/packages/Aerith.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("Aerith")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Aerith")| Aerith | HTML | R Script |
| Input Data Format and File Handling in Aerith | HTML | R Script |
| PSM Annotation and Visualization | HTML | R Script |
| Score function test of PSM | HTML | R Script |
| Theoretic spectra generation of SIP-labeled compound | HTML | R Script |
| Theoretic spectra generation of SIP-labeled peptide | HTML | R Script |
| Visualization of SIP proteomic result | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation, MassSpectrometry, Metabolomics, Proteomics, QualityControl, Software, Visualization |
| Version | 1.1.3 |
| In Bioconductor since | BioC 3.23 (R-4.6) (< 6 months) |
| License | GPL-3 |
| Depends | R (>= 4.4.0) |
| Imports | mzR, methods, Rcpp, ggplot2, ggrepel, dplyr, stringr, data.table, scales |
| System Requirements | C++17 |
| URL | https://github.com/xyz1396/Aerith |
| Bug Reports | https://github.com/xyz1396/Aerith/issues |
See More
| Suggests | knitr, rmarkdown, testthat, tidyr |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Aerith_1.1.3.tar.gz |
| Windows Binary (x86_64) | Aerith_1.1.3.zip (64-bit only) |
| macOS Binary (big-sur-x86_64) | Aerith_1.1.3.tgz |
| macOS Binary (sonoma-arm64) | Aerith_1.1.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Aerith |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Aerith |
| Package Short Url | https://bioconductor.org/packages/Aerith/ |
| Package Downloads Report | Download Stats |