ASpli

This is the development version of ASpli; for the stable release version, see ASpli.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4

Analysis of Alternative Splicing Using RNA-Seq

Bioconductor version: Development (3.24)

Integrative pipeline for the analysis of alternative splicing using RNAseq.

Author: Estefania Mancini, Andres Rabinovich, Javier Iserte, Marcelo Yanovsky and Ariel Chernomoretz

Maintainer: Ariel Chernomoretz <algo107 at gmail.com>

Citation (from within R, enter citation("ASpli")):

Estefania Mancini, Andres Rabinovich, Javier Iserte, Marcelo Yanovsky and Ariel Chernomoretz. ASpli: Analysis of Alternative Splicing Using RNA-Seq. doi:10.18129/B9.bioc.ASpli, R package version 2.23.0, https://bioconductor.org/packages/ASpli.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("ASpli")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ASpli")

ASpli	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Alignment, AlternativeSplicing, Coverage, DifferentialExpression, DifferentialSplicing, GeneExpression, GenomeAnnotation, ImmunoOncology, RNASeq, Sequencing, Software, TimeCourse, Transcription
Version	2.23.0
In Bioconductor since	BioC 3.4 (R-3.3) (10 years)
License	GPL
Depends	methods, grDevices, stats, utils, parallel, edgeR, limma, AnnotationDbi
Imports	GenomicRanges, GenomicFeatures, BiocGenerics, IRanges, GenomicAlignments, Gviz, S4Vectors, Rsamtools, BiocStyle, igraph, htmltools, data.table, UpSetR, tidyr, DT, MASS, grid, graphics, pbmcapply, txdbmaker
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me
Imports Me	saseR
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ASpli_2.23.0.tar.gz
Windows Binary (x86_64)	ASpli_2.23.0.zip
macOS Binary (big-sur-x86_64)	ASpli_2.23.0.tgz
macOS Binary (sonoma-arm64)	ASpli_2.23.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ASpli
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ASpli
Package Short Url	https://bioconductor.org/packages/ASpli/
Package Downloads Report	Download Stats