Rarr
This is the development version of Rarr; for the stable release version, see Rarr.
A Simple and Performant Native R Reader & Writer for Zarr Arrays
Bioconductor version: 3.24 · Package version: 2.1.43
The Zarr specification defines a format for chunked, compressed, N-dimensional arrays. Its design allows efficient access to subsets of the stored array, and supports both local and cloud storage systems. Rarr aims to implement this specification in R with minimal reliance on an external tools or libraries.
Author: Mike Smith [aut, ccp] (ORCID: 
, Maintainer from 2022 to 2025.), Hugo Gruson [aut, cre] , Artür Manukyan [ctb], Sharla Gelfand [ctb], German Network for Bioinformatics Infrastructure - de.NBI [fnd] (ROR: <https://ror.org/01vmpm840>)
Maintainer: Hugo Gruson <hugo.gruson at embl.de>
Citation
From within R, enter citation("Rarr"):
Mike Smith, Hugo Gruson. Rarr: A Simple and Performant Native R Reader & Writer for Zarr Arrays. doi:10.18129/B9.bioc.Rarr, R package version 2.1.43, https://bioconductor.org/packages/Rarr.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("Rarr")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 2.1.43 |
| License | MIT + file LICENSE |
| URL | https://huber-group-embl.github.io/Rarr/ https://github.com/Huber-group-EMBL/Rarr |
| Bug Reports | https://github.com/Huber-group-EMBL/Rarr/issues |
| System Requirements | GNU make |
| In Bioconductor since | BioC 3.17 (R-4.3) (3 years) |
| Downloads rank | 604 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, Software |
| Package Short Url | https://bioconductor.org/packages/Rarr/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rarr")| Supported Zarr features in Rarr | HTML | R Script |
| Working with remote Zarr arrays in R | HTML | |
| Working with Zarr arrays in R | HTML | R Script |
| Design principles for the Rarr package | HTML | |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | Rarr_2.1.43.tar.gz |
| Windows binary (x86_64) | Rarr_2.1.43.zip |
| macOS binary (arm64) | Rarr_2.1.43.tgz |
| macOS binary (x86_64) | Rarr_2.1.43.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Rarr |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rarr |
| Package Downloads Report | Download Stats |