derfinderHelper
derfinder helper package
Bioconductor version: 3.23 · Package version: 1.46.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Helper package for speeding up the derfinder package when using multiple cores. This package is particularly useful when using BiocParallel and it helps reduce the time spent loading the full derfinder package when running the F-statistics calculation in parallel.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("derfinderHelper")Details
| Maintainer | Leonardo Collado-Torres <lcolladotor@gmail.com> |
| Author | Leonardo Collado-Torres [aut, cre] (ORCID: <https://orcid.org/0000-0003-2140-308X>), Andrew E. Jaffe [aut] (ORCID: <https://orcid.org/0000-0001-6886-1454>), Jeffrey T. Leek [aut, ths] (ORCID: <https://orcid.org/0000-0002-2873-2671>) |
| License | Artistic-2.0 |
| URL | https://github.com/leekgroup/derfinderHelper |
| Bug Reports | https://support.bioconductor.org/t/derfinderHelper |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software |
| Package Short Url | https://bioconductor.org/packages/derfinderHelper/ |
Citation
From within R, enter citation("derfinderHelper"):
Leonardo Collado-Torres, Andrew E. Jaffe, Jeffrey T. Leek. derfinderHelper: derfinder helper package. doi:10.18129/B9.bioc.derfinderHelper, R package version 1.46.0, https://bioconductor.org/packages/derfinderHelper.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | derfinderHelper_1.46.0.tar.gz |
| Windows binary (x86_64) | derfinderHelper_1.46.0.zip |
| macOS binary (arm64) | derfinderHelper_1.46.0.tgz |
| macOS binary (x86_64) | derfinderHelper_1.46.0.tgz |
Dependencies
Depends: R (>= 3.2.2)
Imports: IRanges (>= 1.99.27), Matrix, methods, S4Vectors (>= 0.2.2)
Suggests: sessioninfo, knitr (>= 1.6), BiocStyle (>= 2.5.19), RefManageR, rmarkdown (>= 0.3.3), testthat, covr
Reverse dependencies
Imports Me (1): derfinder