curatedTBData
This is the released version of curatedTBData; for the devel version, see curatedTBData.
All Bioconductor versions of curatedTBData
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14
Curation of existing tuberculosis transcriptomic studies
Bioconductor version: 3.23 · Package version: 2.8.0
The curatedTBData is an R package that provides standardized, curated tuberculosis(TB) transcriptomic studies. The initial release of the package contains 49 studies. The curatedTBData package allows users to access tuberculosis trancriptomic efficiently and to make efficient comparison for different TB gene signatures across multiple datasets.
Author: Xutao Wang [aut, cre], W. Evan Johnson [aut], Prasad Patil [aut]
Maintainer: Xutao Wang <xutaow at bu.edu>
Citation
From within R, enter citation("curatedTBData"):
Xutao Wang, W. Evan Johnson, Prasad Patil. curatedTBData: Curation of existing tuberculosis transcriptomic studies. doi:10.18129/B9.bioc.curatedTBData, R package version 2.8.0, https://bioconductor.org/packages/curatedTBData.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("curatedTBData")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 2.8.0 |
| License | MIT + file LICENSE |
| URL | https://github.com/compbiomed/curatedTBData |
| Bug Reports | https://github.com/compbiomed/curatedTBData/issues |
| Last updated | 2026-05-05 |
| In Bioconductor since | BioC 3.14 (R-4.1) (4 years) |
| Downloads rank | 310 of 434 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | ExperimentData, ExperimentHub, GEO, Homo_sapiens_Data |
| Package Short Url | https://bioconductor.org/packages/curatedTBData/ |
Documentation
| Reference Manual |
Download
Follow the installation instructions to use this package in your R session.
| Source package | curatedTBData_2.8.0.tar.gz |
| Source Repository | git clone https://git.bioconductor.org/packages/curatedTBData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/curatedTBData |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.3.0)
Imports: AnnotationHub, ExperimentHub, MultiAssayExperiment, rlang, stats
Suggests: BiocStyle, DT, dplyr, HGNChelper, knitr, methods, rmarkdown, SummarizedExperiment, sva, testthat
Reverse dependencies
Suggests Me (1): BatchQC