attract

This is the released version of attract; for the devel version, see attract.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7

Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape

Bioconductor version: Release (3.23)

This package contains the functions to find the gene expression modules that represent the drivers of Kauffman's attractor landscape. The modules are the core attractor pathways that discriminate between different cell types of groups of interest. Each pathway has a set of synexpression groups, which show transcriptionally-coordinated changes in gene expression.

Author: Jessica Mar

Maintainer: Samuel Zimmerman <samuel.e.zimmerman at gmail.com>

Citation (from within R, enter citation("attract")):

Jessica Mar. attract: Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape. doi:10.18129/B9.bioc.attract, R package version 1.64.0, https://bioconductor.org/packages/attract.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("attract")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("attract")

Tutorial on How to Use the Functions in the \texttt{attract} Package	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GeneExpression, GeneSetEnrichment, ImmunoOncology, KEGG, Microarray, Pathways, RNASeq, Reactome, Software
Version	1.64.0
In Bioconductor since	BioC 2.7 (R-2.12) (16 years)
License	LGPL (>= 2.0)
Depends	R (>= 3.4.0), AnnotationDbi
Imports	Biobase, limma, cluster, GOstats, graphics, stats, reactome.db, KEGGREST, org.Hs.eg.db, utils, methods
System Requirements
URL

Suggests	illuminaHumanv1.db
Linking To
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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	attract_1.64.0.tar.gz
Windows Binary (x86_64)	attract_1.64.0.zip
macOS Binary (big-sur-x86_64)	attract_1.64.0.tgz
macOS Binary (sonoma-arm64)	attract_1.64.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/attract
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/attract
Package Short Url	https://bioconductor.org/packages/attract/
Package Downloads Report	Download Stats