alabaster

This is the released version of alabaster; for the devel version, see alabaster.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17

Umbrella for the Alabaster Framework

Bioconductor version: Release (3.23)

Umbrella for the alabaster suite, providing a single-line import for all alabaster.* packages. Installing this package ensures that all known alabaster.* packages are also installed, avoiding problems with missing packages when a staging method or loading function is dynamically requested. Obviously, this comes at the cost of needing to install more packages, so advanced users and application developers may prefer to install the required alabaster.* packages individually.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("alabaster")):

Aaron Lun. alabaster: Umbrella for the Alabaster Framework. doi:10.18129/B9.bioc.alabaster, R package version 1.12.0, https://bioconductor.org/packages/alabaster.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("alabaster")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("alabaster")

alabaster umbrella	HTML	R Script
Reference Manual	PDF
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataImport, DataRepresentation, Software
Version	1.12.0
In Bioconductor since	BioC 3.17 (R-4.3) (3.5 years)
License	MIT + file LICENSE
Depends	alabaster.base
Imports	alabaster.matrix, alabaster.ranges, alabaster.se, alabaster.sce, alabaster.spatial, alabaster.string, alabaster.vcf, alabaster.bumpy, alabaster.mae
System Requirements
URL

Suggests	knitr, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	alabaster_1.12.0.tar.gz
Windows Binary (x86_64)	alabaster_1.12.0.zip
macOS Binary (big-sur-x86_64)	alabaster_1.12.0.tgz
macOS Binary (sonoma-arm64)	alabaster_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/alabaster
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/alabaster
Package Short Url	https://bioconductor.org/packages/alabaster/
Package Downloads Report	Download Stats