affylmGUI

This is the released version of affylmGUI; for the devel version, see affylmGUI.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

GUI for limma Package with Affymetrix Microarrays

Bioconductor version: Release (3.23)

A Graphical User Interface (GUI) for analysis of Affymetrix microarray gene expression data using the affy and limma packages.

Author: James Wettenhall [cre,aut], Gordon Smyth [aut], Ken Simpson [aut], Keith Satterley [ctb]

Maintainer: Gordon Smyth <smyth at wehi.edu.au>

Citation (from within R, enter citation("affylmGUI")):

James Wettenhall, Gordon Smyth, Ken Simpson. affylmGUI: GUI for limma Package with Affymetrix Microarrays. doi:10.18129/B9.bioc.affylmGUI, R package version 1.86.0, https://bioconductor.org/packages/affylmGUI.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("affylmGUI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affylmGUI")

affylmGUI Vignette	PDF	R Script
Extracting affy and limma objects from affylmGUI files	PDF
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	BatchEffect, Bayesian, DataImport, DifferentialExpression, GUI, GeneExpression, Microarray, MultipleComparison, Normalization, OneChannel, Preprocessing, ProprietaryPlatforms, QualityControl, Regression, Software, TimeCourse, Transcription, mRNAMicroarray
Version	1.86.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 21.5 years)
License	GPL (>=2)
Depends
Imports	grDevices, graphics, stats, utils, tcltk, tkrplot, limma, affy, affyio, affyPLM, gcrma, BiocGenerics, AnnotationDbi, BiocManager, R2HTML, xtable
System Requirements
URL	http://bioinf.wehi.edu.au/affylmGUI/

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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	affylmGUI_1.86.0.tar.gz
Windows Binary (x86_64)	affylmGUI_1.86.0.zip
macOS Binary (big-sur-x86_64)	affylmGUI_1.86.0.tgz
macOS Binary (sonoma-arm64)	affylmGUI_1.86.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/affylmGUI
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/affylmGUI
Package Short Url	https://bioconductor.org/packages/affylmGUI/
Package Downloads Report	Download Stats