TargetScoreData

This is the released version of TargetScoreData; for the devel version, see TargetScoreData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13

TargetScoreData

Bioconductor version: Release (3.23)

Precompiled and processed miRNA-overexpression fold-changes from 84 Gene Expression Omnibus (GEO) series corresponding to 6 platforms, 77 human cells or tissues, and 113 distinct miRNAs. Accompanied with the data, we also included in this package the sequence feature scores from TargetScanHuman 6.1 including the context+ score and the probabilities of conserved targeting for each miRNA-mRNA interaction. Thus, the user can use these static sequence-based scores together with user-supplied tissue/cell-specific fold-change due to miRNA overexpression to predict miRNA targets using the package TargetScore (download separately)

Author: Yue Li

Maintainer: Yue Li <yueli at cs.toronto.edu>

Citation (from within R, enter citation("TargetScoreData")):

Yue Li. TargetScoreData: TargetScoreData. doi:10.18129/B9.bioc.TargetScoreData, R package version 1.48.0, https://bioconductor.org/packages/TargetScoreData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TargetScoreData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, RNASeqData, miRNAData
Version	1.48.0
In Bioconductor since	BioC 2.13 (R-3.0) (13 years)
License	GPL-2
Depends
Imports
System Requirements
URL

Suggests	TargetScore, gplots
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	TargetScore
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TargetScoreData_1.48.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/TargetScoreData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TargetScoreData
Package Short Url	https://bioconductor.org/packages/TargetScoreData/
Package Downloads Report	Download Stats