TTMap

This is the released version of TTMap; for the devel version, see TTMap.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7

Two-Tier Mapper: a clustering tool based on topological data analysis

Bioconductor version: Release (3.23)

TTMap is a clustering method that groups together samples with the same deviation in comparison to a control group. It is specially useful when the data is small. It is parameter free.

Author: Rachel Jeitziner

Maintainer: Rachel Jeitziner <rachel.jeitziner at epfl.ch>

Citation (from within R, enter citation("TTMap")):

Rachel Jeitziner. TTMap: Two-Tier Mapper: a clustering tool based on topological data analysis. doi:10.18129/B9.bioc.TTMap, R package version 1.34.0, https://bioconductor.org/packages/TTMap.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TTMap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TTMap")

Manual for the TTMap library	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Classification, Clustering, DifferentialExpression, Microarray, MultipleComparison, Software
Version	1.34.0
In Bioconductor since	BioC 3.7 (R-3.5) (8.5 years)
License	GPL-2
Depends	rgl, colorRamps
Imports	grDevices, graphics, stats, utils, methods, SummarizedExperiment, Biobase
System Requirements
URL

Suggests	BiocStyle, airway
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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TTMap_1.34.0.tar.gz
Windows Binary (x86_64)	TTMap_1.34.0.zip
macOS Binary (big-sur-x86_64)	TTMap_1.34.0.tgz
macOS Binary (sonoma-arm64)	TTMap_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TTMap
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TTMap
Package Short Url	https://bioconductor.org/packages/TTMap/
Package Downloads Report	Download Stats