TDbasedUFE
This is the released version of TDbasedUFE; for the devel version, see TDbasedUFE.
Tensor Decomposition Based Unsupervised Feature Extraction
Bioconductor version: Release (3.23)
This is a comprehensive package to perform Tensor decomposition based unsupervised feature extraction. It can perform unsupervised feature extraction. It uses tensor decomposition. It is applicable to gene expression, DNA methylation, and histone modification etc. It can perform multiomics analysis. It is also potentially applicable to single cell omics data sets.
Author: Y-h. Taguchi [aut, cre] 
Maintainer: Y-h. Taguchi <tag at granular.com>
citation("TDbasedUFE")):Y-h. Taguchi. TDbasedUFE: Tensor Decomposition Based Unsupervised Feature Extraction. doi:10.18129/B9.bioc.TDbasedUFE, R package version 1.12.0, https://bioconductor.org/packages/TDbasedUFE.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TDbasedUFE")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TDbasedUFE")| QuickStart | HTML | R Script |
| TDbasedUFE | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | FeatureExtraction, GeneExpression, MethylationArray, SingleCell, Software |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.17 (R-4.3) (3.5 years) |
| License | GPL-3 |
| Depends | |
| Imports | GenomicRanges, rTensor, readr, methods, MOFAdata, tximport, tximportData, graphics, stats, utils, shiny |
| System Requirements | |
| URL | https://github.com/tagtag/TDbasedUFE |
| Bug Reports | https://github.com/tagtag/TDbasedUFE/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | TDbasedUFEadv |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TDbasedUFE_1.12.0.tar.gz |
| Windows Binary (x86_64) | TDbasedUFE_1.12.0.zip (64-bit only) |
| macOS Binary (big-sur-x86_64) | TDbasedUFE_1.12.0.tgz |
| macOS Binary (sonoma-arm64) | TDbasedUFE_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TDbasedUFE |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TDbasedUFE |
| Package Short Url | https://bioconductor.org/packages/TDbasedUFE/ |
| Package Downloads Report | Download Stats |