SplicingFactory
Splicing Diversity Analysis for Transcriptome Data
Bioconductor version: 3.23 · Package version: 1.20.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
The SplicingFactory R package uses transcript-level expression values to analyze splicing diversity based on various statistical measures, like Shannon entropy or the Gini index. These measures can quantify transcript isoform diversity within samples or between conditions. Additionally, the package analyzes the isoform diversity data, looking for significant changes between conditions.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SplicingFactory")Details
| Maintainer | Endre Sebestyen <endre.sebestyen@gmail.com> |
| Author | Peter A. Szikora [aut], Tamas Por [aut], Endre Sebestyen [aut, cre] (ORCID: <https://orcid.org/0000-0001-5470-2161>) |
| License | GPL-3 + file LICENSE |
| URL | https://github.com/esebesty/SplicingFactory |
| Bug Reports | https://github.com/esebesty/SplicingFactory/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | AlternativeSplicing, DifferentialSplicing, RNASeq, Software, TranscriptomeVariant, Transcriptomics |
| Package Short Url | https://bioconductor.org/packages/SplicingFactory/ |
Citation
From within R, enter citation("SplicingFactory"):
Peter A. Szikora, Tamas Por, Endre Sebestyen. SplicingFactory: Splicing Diversity Analysis for Transcriptome Data. doi:10.18129/B9.bioc.SplicingFactory, R package version 1.20.0, https://bioconductor.org/packages/SplicingFactory.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | SplicingFactory_1.20.0.tar.gz |
| Windows binary (x86_64) | SplicingFactory_1.20.0.zip |
| macOS binary (arm64) | SplicingFactory_1.20.0.tgz |
| macOS binary (x86_64) | SplicingFactory_1.20.0.tgz |