OncoScore

This is the released version of OncoScore; for the devel version, see OncoScore.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3

A tool to identify potentially oncogenic genes

Bioconductor version: Release (3.23)

OncoScore is a tool to measure the association of genes to cancer based on citation frequencies in biomedical literature. The score is evaluated from PubMed literature by dynamically updatable web queries.

Author: Luca De Sano [cre, aut] ORCID: 0000-0002-9618-3774 , Carlo Gambacorti Passerini [ctb], Rocco Piazza [ctb], Daniele Ramazzotti [aut] ORCID: 0000-0002-6087-2666 , Roberta Spinelli [ctb]

Maintainer: Luca De Sano <luca.desano at gmail.com>

Citation (from within R, enter citation("OncoScore")):

Luca De Sano, Daniele Ramazzotti. OncoScore: A tool to identify potentially oncogenic genes. doi:10.18129/B9.bioc.OncoScore, R package version 1.40.0, https://bioconductor.org/packages/OncoScore.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OncoScore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OncoScore")

Introduction	HTML	R Script
Running OncoScore	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	BiomedicalInformatics, Software
Version	1.40.0
In Bioconductor since	BioC 3.3 (R-3.3) (10.5 years)
License	file LICENSE
Depends	R (>= 4.1.0)
Imports	biomaRt, grDevices, graphics, utils, methods
System Requirements
URL	https://github.com/danro9685/OncoScore
Bug Reports	https://github.com/danro9685/OncoScore

Suggests	BiocGenerics, BiocStyle, knitr, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	OncoScore_1.40.0.tar.gz
Windows Binary (x86_64)	OncoScore_1.40.0.zip
macOS Binary (big-sur-x86_64)	OncoScore_1.40.0.tgz
macOS Binary (sonoma-arm64)	OncoScore_1.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/OncoScore
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/OncoScore
Package Short Url	https://bioconductor.org/packages/OncoScore/
Package Downloads Report	Download Stats