Neve2006
This is the released version of Neve2006; for the devel version, see Neve2006.
expression and CGH data on breast cancer cell lines
Bioconductor version: Release (3.23)
Experimental organization of combined expression and CGH data
Author: M. Neve et al. in Gray Lab at LBL
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
citation("Neve2006")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Neve2006")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Neve2006")| Neve 2006: combined CGH and expression data | R Script | |
| Reference Manual |
Details
| biocViews | BreastCancerData, CancerData, ExperimentData |
| Version | 0.50.0 |
| License | Artistic-2.0 |
| Depends | R (>= 2.14.0), tools, methods, utils, Biobase(>= 1.14.0), hgu133a.db, annotate |
| Imports | |
| System Requirements | |
| URL |
See More
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| Depends On Me | |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Neve2006_0.50.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/Neve2006 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Neve2006 |
| Package Short Url | https://bioconductor.org/packages/Neve2006/ |
| Package Downloads Report | Download Stats |