MsBackendRawFileReader
This is the released version of MsBackendRawFileReader; for the devel version, see MsBackendRawFileReader.
All Bioconductor versions of MsBackendRawFileReader
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14
Mass Spectrometry Backend for Reading Thermo Fisher Scientific raw Files
Bioconductor version: 3.23 · Package version: 1.18.0
implements a MsBackend for the Spectra package using Thermo Fisher Scientific's NewRawFileReader .Net libraries. The package is generalizing the functionality introduced by the rawrr package Methods defined in this package are supposed to extend the Spectra Bioconductor package.
Author: Christian Panse [aut, cre] 
, Tobias Kockmann [aut] , Roger Gine Bertomeu [ctb]
Maintainer: Christian Panse <cp at fgcz.ethz.ch>
Citation
From within R, enter citation("MsBackendRawFileReader"):
Christian Panse, Tobias Kockmann. MsBackendRawFileReader: Mass Spectrometry Backend for Reading Thermo Fisher Scientific raw Files. doi:10.18129/B9.bioc.MsBackendRawFileReader, R package version 1.18.0, https://bioconductor.org/packages/MsBackendRawFileReader.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MsBackendRawFileReader")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.18.0 |
| License | GPL-3 |
| URL | https://github.com/fgcz/MsBackendRawFileReader |
| Bug Reports | https://github.com/fgcz/MsBackendRawFileReader/issues |
| System Requirements | mono-runtime 4.x or higher (including System.Data library) on Linux/macOS, .Net Framework (>= 4.5.1) on Microsoft Windows. |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.14 (R-4.1) (4 years) |
| Downloads rank | 1714 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | MassSpectrometry, Metabolomics, Proteomics, Software |
| Package Short Url | https://bioconductor.org/packages/MsBackendRawFileReader/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MsBackendRawFileReader")| On Using and Extending the MsBackendRawFileReader Backend | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | MsBackendRawFileReader_1.18.0.tar.gz |
| macOS binary (arm64) | MsBackendRawFileReader_1.18.0.tgz |
| macOS binary (x86_64) | MsBackendRawFileReader_1.18.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MsBackendRawFileReader |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MsBackendRawFileReader |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.1), methods, Spectra (>= 1.15.10)
Imports: ProtGenerics (>= 1.35.3), MsCoreUtils, S4Vectors, IRanges, rawrr (>= 1.17.2), utils, BiocParallel
Suggests: BiocStyle (>= 2.5), ExperimentHub, MsBackendMgf, knitr, lattice, mzR, protViz (>= 0.7), rmarkdown, tartare (>= 1.5), testthat