MiChip
This is the released version of MiChip; for the devel version, see MiChip.
MiChip Parsing and Summarizing Functions
Bioconductor version: Release (3.23)
This package takes the MiChip miRNA microarray .grp scanner output files and parses these out, providing summary and plotting functions to analyse MiChip hybridizations. A set of hybridizations is packaged into an ExpressionSet allowing it to be used by other BioConductor packages.
Author: Jonathon Blake <blake at embl.de>
Maintainer: Jonathon Blake <blake at embl.de>
citation("MiChip")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MiChip")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MiChip")| MiChip miRNA Microarray Processing | R Script | |
| Reference Manual |
Details
| biocViews | Microarray, Preprocessing, Software |
| Version | 1.66.0 |
| In Bioconductor since | BioC 2.5 (R-2.10) (17 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.3.0), Biobase |
| Imports | Biobase |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MiChip_1.66.0.tar.gz |
| Windows Binary (x86_64) | MiChip_1.66.0.zip (64-bit only) |
| macOS Binary (big-sur-x86_64) | MiChip_1.66.0.tgz |
| macOS Binary (sonoma-arm64) | MiChip_1.66.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MiChip |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MiChip |
| Bioc Package Browser | https://code.bioconductor.org/browse/MiChip/ |
| Package Short Url | https://bioconductor.org/packages/MiChip/ |
| Package Downloads Report | Download Stats |