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MDTS

This is the released version of MDTS; for the devel version, see MDTS.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7

Detection of de novo deletion in targeted sequencing trios


Bioconductor version: Release (3.23)

A package for the detection of de novo copy number deletions in targeted sequencing of trios with high sensitivity and positive predictive value.

Author: Jack M.. Fu [aut, cre]

Maintainer: Jack M.. Fu <jmfu at jhsph.edu>

Citation (from within R, enter citation("MDTS")):

Jack M.. Fu. MDTS: Detection of de novo deletion in targeted sequencing trios. doi:10.18129/B9.bioc.MDTS, R package version 1.32.0, https://bioconductor.org/packages/MDTS.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MDTS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MDTS")
Title of your vignette HTML R Script
Reference ManualPDF

Details

biocViews Coverage, DataImport, Sequencing, Software, StatisticalMethod, TargetedResequencing, Technology
Version1.32.0
In Bioconductor sinceBioC 3.7 (R-3.5) (8.5 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports GenomicAlignments, GenomicRanges, IRanges, Biostrings, DNAcopy, Rsamtools, parallel, stringr
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MDTS_1.32.0.tar.gz
Windows Binary (x86_64) MDTS_1.31.0.zip
macOS Binary (big-sur-x86_64) MDTS_1.32.0.tgz
macOS Binary (sonoma-arm64) MDTS_1.32.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/MDTS
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/MDTS
Package Short Url https://bioconductor.org/packages/MDTS/
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